HL_6MTC_094

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6MTC|1|9|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_094 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.285

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6MTC|1|9|C|498
6MTC|1|9|G|499
6MTC|1|9|A|500
6MTC|1|9|C|501
6MTC|1|9|C|502
6MTC|1|9|C|503
6MTC|1|9|G|504

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain YY

40S ribosomal protein S24