HL_6MTC_099

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG

Length

3 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_099 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3499

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6MTC|1|9|C|833
6MTC|1|9|C|834
6MTC|1|9|G|841

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24