HL_6MTC_107

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

6MTC|1|9|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_107 not in the Motif Atlas

Homologous match to HL_8P9A_215

Geometric discrepancy: 0.1552

The information below is about HL_8P9A_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6MTC|1|9|G|1245
6MTC|1|9|A|1246
6MTC|1|9|C|1247
6MTC|1|9|B8N|1248
6MTC|1|9|C|1249
6MTC|1|9|A|1250
6MTC|1|9|A|1251
6MTC|1|9|C|1252
6MTC|1|9|A|1253
6MTC|1|9|C|1254

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

40S ribosomal protein S16

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29