HL_8P9A_215

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8P9A|1|sR|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|G|1188
8P9A|1|sR|A|1189
8P9A|1|sR|C|1190
8P9A|1|sR|U|1191
8P9A|1|sR|C|1192
8P9A|1|sR|A|1193
8P9A|1|sR|A|1194
8P9A|1|sR|C|1195
8P9A|1|sR|A|1196
8P9A|1|sR|C|1197

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

Small ribosomal subunit protein uS10

Chain sM

Suppressor protein STM1