HL_6MTC_113

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTC_113 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.168

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTC|1|9|C|1565
6MTC|1|9|G|1566
6MTC|1|9|G|1567
6MTC|1|9|C|1568
6MTC|1|9|A|1569
6MTC|1|9|G|1570

Current chains

Chain 9

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain TT

40S ribosomal protein S19