HL_6MTC_120
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCUUG(1MA)AAC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 6MTC|1|5|C|1325
- QA status
- Modified nucleotides: 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTC_120 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.0933
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6MTC|1|5|U|1317
6MTC|1|5|C|1318
6MTC|1|5|U|1319
6MTC|1|5|U|1320
6MTC|1|5|G|1321
6MTC|1|5|1MA|1322
6MTC|1|5|A|1323
6MTC|1|5|A|1324
6MTC|1|5|C|1325
6MTC|1|5|A2M|1326
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain a
- 60S ribosomal protein L27a
- Chain e
- 60S ribosomal protein L32
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