HL_6MTD_001
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 6MTD|1|5|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTD_001 not in the Motif Atlas
- Homologous match to HL_5TBW_001
- Geometric discrepancy: 0.1186
- The information below is about HL_5TBW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6MTD|1|5|U|37
6MTD|1|5|A|38
6MTD|1|5|A|39
6MTD|1|5|G|40
6MTD|1|5|C|41
6MTD|1|5|A|42
6MTD|1|5|U|43
6MTD|1|5|A|44
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain o
- eL42
Coloring options: