HL_6MTD_010

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGUAA(OMG)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_010 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.37

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|C|367
6MTD|1|5|C|368
6MTD|1|5|G|369
6MTD|1|5|U|370
6MTD|1|5|A|371
6MTD|1|5|A|372
6MTD|1|5|OMG|373
6MTD|1|5|G|374

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain j

eL37

Chain l

eL39