HL_6MTD_015
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- C(OMG)UCUUG(1MA)AAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- 6MTD|1|5|C|1325
- QA status
- Modified nucleotides: OMG, 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTD_015 not in the Motif Atlas
- Geometric match to HL_3SKL_006
- Geometric discrepancy: 0.3891
- The information below is about HL_3SKL_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6MTD|1|5|C|1315
6MTD|1|5|OMG|1316
6MTD|1|5|U|1317
6MTD|1|5|C|1318
6MTD|1|5|U|1319
6MTD|1|5|U|1320
6MTD|1|5|G|1321
6MTD|1|5|1MA|1322
6MTD|1|5|A|1323
6MTD|1|5|A|1324
6MTD|1|5|C|1325
6MTD|1|5|A2M|1326
6MTD|1|5|C|1327
6MTD|1|5|G|1328
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain C
- uL4
- Chain a
- uL15
- Chain e
- eL32
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