HL_6MTD_029

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6MTD|1|5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_029 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2819

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6MTD|1|5|C|1978
6MTD|1|5|A|1979
6MTD|1|5|U|1980
6MTD|1|5|G|1981
6MTD|1|5|G|1982
6MTD|1|5|A|1983
6MTD|1|5|A|1984
6MTD|1|5|G|1985
6MTD|1|5|U|1986
6MTD|1|5|C|1987
6MTD|1|5|G|1988

Current chains

Chain 5

28S rRNA

Nearby chains

Chain t

eL11

Chain v

eEF2