HL_6MTD_041

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_041 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5408

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6MTD|1|5|G|2664
6MTD|1|5|U|2665
6MTD|1|5|U|2666
6MTD|1|5|C|2667
6MTD|1|5|G|2668
6MTD|1|5|C|2669
6MTD|1|5|C|2670

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain p

eL43