HL_6MTD_046
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUCGG
- Length
- 6 nucleotides
- Bulged bases
- 6MTD|1|5|U|2874
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTD_046 not in the Motif Atlas
- Homologous match to HL_8C3A_043
- Geometric discrepancy: 0.0963
- The information below is about HL_8C3A_043
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
6MTD|1|5|C|2872
6MTD|1|5|U|2873
6MTD|1|5|U|2874
6MTD|1|5|C|2875
6MTD|1|5|G|2876
6MTD|1|5|G|2877
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eL41
- Chain p
- eL43
Coloring options: