HL_6MTD_047

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGC

Length

3 nucleotides

Bulged bases

6MTD|1|5|G|3597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_047 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2624

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6MTD|1|5|G|2901
6MTD|1|5|G|3597
6MTD|1|5|C|3598

Current chains

Chain 5

28S rRNA

Nearby chains

Chain II

eS8

Chain LL

uS17

Chain R

eL19