HL_6MTD_080

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

6MTD|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_080 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3421

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_78364.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6MTD|1|8|G|121
6MTD|1|8|G|122
6MTD|1|8|U|123
6MTD|1|8|U|124
6MTD|1|8|C|125
6MTD|1|8|C|126
6MTD|1|8|U|127
6MTD|1|8|C|128
6MTD|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

uL23