HL_6MTD_083

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6MTD|1|9|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_083 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1703

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTD|1|9|G|156
6MTD|1|9|U|157
6MTD|1|9|A|158
6MTD|1|9|A|159
6MTD|1|9|U|160
6MTD|1|9|U|161
6MTD|1|9|C|162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain YY

eS24