3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUAAUUC
Length
7 nucleotides
Bulged bases
6MTD|1|9|U|161
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6MTD_083 not in the Motif Atlas
Homologous match to HL_4V88_188
Geometric discrepancy: 0.1703
The information below is about HL_4V88_188
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6MTD|1|9|G|156
6MTD|1|9|U|157
6MTD|1|9|A|158
6MTD|1|9|A|159
6MTD|1|9|U|160
6MTD|1|9|U|161
6MTD|1|9|C|162

Current chains

Chain 9
18S rRNA

Nearby chains

Chain GG
eS6
Chain YY
eS24

Coloring options:


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