HL_6MTD_088

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_088 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.2516

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6MTD|1|9|U|416
6MTD|1|9|C|417
6MTD|1|9|A|418
6MTD|1|9|G|419
6MTD|1|9|G|420
6MTD|1|9|G|421

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain JJ

uS4

Chain LL

uS17

Chain WW

uS8

Chain XX

uS12