3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6MTD_100 not in the Motif Atlas
Homologous match to HL_4V88_208
Geometric discrepancy: 0.3211
The information below is about HL_4V88_208
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
14

Unit IDs

6MTD|1|9|G|1054
6MTD|1|9|A|1055
6MTD|1|9|U|1056
6MTD|1|9|C|1057
6MTD|1|9|A|1058
6MTD|1|9|G|1059
6MTD|1|9|A|1060
6MTD|1|9|U|1061
6MTD|1|9|A|1062
6MTD|1|9|C|1063
6MTD|1|9|C|1064

Current chains

Chain 9
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain OO
uS11
Chain aa
eS26

Coloring options:


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