HL_6MTD_104

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

6MTD|1|9|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_104 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.1797

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6MTD|1|9|G|1245
6MTD|1|9|A|1246
6MTD|1|9|C|1247
6MTD|1|9|B8N|1248
6MTD|1|9|C|1249
6MTD|1|9|A|1250
6MTD|1|9|A|1251
6MTD|1|9|C|1252
6MTD|1|9|A|1253
6MTD|1|9|C|1254

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain dd

uS14

Chain w

SERBP1