HL_6MTD_111
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6MTD|1|9|U|1621, 6MTD|1|9|U|1622, 6MTD|1|9|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MTD_111 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2083
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6MTD|1|9|A|1614
6MTD|1|9|U|1615
6MTD|1|9|U|1616
6MTD|1|9|G|1617
6MTD|1|9|C|1618
6MTD|1|9|A|1619
6MTD|1|9|A|1620
6MTD|1|9|U|1621
6MTD|1|9|U|1622
6MTD|1|9|A|1623
6MTD|1|9|U|1624
6MTD|1|9|U|1625
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain TT
- eS19
- Chain dd
- uS14
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