HL_6MTD_117

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

6MTD|1|5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTD_117 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0835

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6MTD|1|5|U|1317
6MTD|1|5|C|1318
6MTD|1|5|U|1319
6MTD|1|5|U|1320
6MTD|1|5|G|1321
6MTD|1|5|1MA|1322
6MTD|1|5|A|1323
6MTD|1|5|A|1324
6MTD|1|5|C|1325
6MTD|1|5|A2M|1326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32