HL_6MTE_045

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6MTE|1|5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_045 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1015

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6MTE|1|5|C|2872
6MTE|1|5|U|2873
6MTE|1|5|U|2874
6MTE|1|5|C|2875
6MTE|1|5|G|2876
6MTE|1|5|G|2877

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43