HL_6MTE_054

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGGCCGCCGGUGAAAUACC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_054 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1502

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6MTE|1|5|G|3970
6MTE|1|5|G|3971
6MTE|1|5|A|3972
6MTE|1|5|G|3973
6MTE|1|5|G|3974
6MTE|1|5|C|3975
6MTE|1|5|C|3976
6MTE|1|5|G|4039
6MTE|1|5|C|4040
6MTE|1|5|C|4041
6MTE|1|5|G|4042
6MTE|1|5|G|4043
6MTE|1|5|U|4044
6MTE|1|5|G|4045
6MTE|1|5|A|4046
6MTE|1|5|A|4047
6MTE|1|5|A|4048
6MTE|1|5|U|4049
6MTE|1|5|A|4050
6MTE|1|5|C|4051
6MTE|1|5|C|4052

Current chains

Chain 5

28S rRNA

Nearby chains