HL_6MTE_056

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

6MTE|1|5|A|4214, 6MTE|1|5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_056 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1348

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6MTE|1|5|U|4210
6MTE|1|5|C|4211
6MTE|1|5|A|4212
6MTE|1|5|A|4213
6MTE|1|5|A|4214
6MTE|1|5|C|4215
6MTE|1|5|G|4216
6MTE|1|5|G|4217
6MTE|1|5|U|4218
6MTE|1|5|A|4219
6MTE|1|5|6MZ|4220
6MTE|1|5|C|4221
6MTE|1|5|G|4222

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain T

eL21

Chain b

eL29