HL_6MTE_062

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1401

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6MTE|1|5|C|4417
6MTE|1|5|G|4418
6MTE|1|5|U|4419
6MTE|1|5|U|4420
6MTE|1|5|C|4421
6MTE|1|5|A|4422
6MTE|1|5|U|4423
6MTE|1|5|A|4424
6MTE|1|5|G|4425

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

uL16

Chain m

eL40

Chain v

eEF2