HL_6MTE_081

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

6MTE|1|9|A|158, 6MTE|1|9|U|160, 6MTE|1|9|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_081 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2205

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTE|1|9|G|156
6MTE|1|9|U|157
6MTE|1|9|A|158
6MTE|1|9|A2M|159
6MTE|1|9|U|160
6MTE|1|9|U|161
6MTE|1|9|C|162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain YY

eS24