HL_6MTE_089

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6MTE|1|9|A|500, 6MTE|1|9|C|502, 6MTE|1|9|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_089 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3139

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6MTE|1|9|C|498
6MTE|1|9|G|499
6MTE|1|9|A|500
6MTE|1|9|C|501
6MTE|1|9|C|502
6MTE|1|9|C|503
6MTE|1|9|G|504

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain YY

eS24