HL_6MTE_098

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_098 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.336

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6MTE|1|9|G|1054
6MTE|1|9|A|1055
6MTE|1|9|U|1056
6MTE|1|9|C|1057
6MTE|1|9|A|1058
6MTE|1|9|G|1059
6MTE|1|9|A|1060
6MTE|1|9|U|1061
6MTE|1|9|A|1062
6MTE|1|9|C|1063
6MTE|1|9|C|1064

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain OO

uS11

Chain aa

eS26