HL_6MTE_099

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_099 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2332

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6MTE|1|9|U|1114
6MTE|1|9|U|1115
6MTE|1|9|C|1116
6MTE|1|9|C|1117
6MTE|1|9|C|1118
6MTE|1|9|A|1119

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

eS1

Chain bb

eS27