HL_6MTE_100

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_100 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0774

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6MTE|1|9|G|1141
6MTE|1|9|G|1142
6MTE|1|9|A|1143
6MTE|1|9|A|1144
6MTE|1|9|A|1145
6MTE|1|9|C|1146

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain WW

uS8

Chain aa

eS26