HL_6MTE_105

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6MTE|1|9|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6MTE_105 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1058

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6MTE|1|9|G|1366
6MTE|1|9|U|1367
6MTE|1|9|U|1368
6MTE|1|9|A|1369
6MTE|1|9|A|1370
6MTE|1|9|U|1371
6MTE|1|9|U|1372
6MTE|1|9|C|1373

Current chains

Chain 9

18S rRNA

Nearby chains

Chain RR

eS17