3D structure

PDB id
6MTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUG(MA6)(MA6)C
Length
6 nucleotides
Bulged bases
6MTE|1|9|G|1849
QA status
Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6MTE_112 not in the Motif Atlas
Homologous match to HL_4V88_222
Geometric discrepancy: 0.1114
The information below is about HL_4V88_222
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6MTE|1|9|G|1847
6MTE|1|9|U|1848
6MTE|1|9|G|1849
6MTE|1|9|MA6|1850
6MTE|1|9|MA6|1851
6MTE|1|9|C|1852

Current chains

Chain 9
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain n
eL41

Coloring options:


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