HL_6MWN_001
3D structure
- PDB id
- 6MWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.84 Å
Loop
- Sequence
- UGUGAGAGG
- Length
- 9 nucleotides
- Bulged bases
- 6MWN|1|A|A|628, 6MWN|1|A|G|629, 6MWN|1|A|G|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6MWN_001 not in the Motif Atlas
- Homologous match to HL_6MWN_003
- Geometric discrepancy: 0.4635
- The information below is about HL_6MWN_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25061.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6MWN|1|A|U|624
6MWN|1|A|G|625
6MWN|1|A|U|626
6MWN|1|A|G|627
6MWN|1|A|A|628
6MWN|1|A|G|629
6MWN|1|A|A|630
6MWN|1|A|G|631
6MWN|1|A|G|632
Current chains
- Chain A
- HAV dV RNA (92-MER)
Nearby chains
- Chain B
- Internal ribosome entry site; IRES
- Chain C
- Fab HAVx Heavy Chain
- Chain D
- Fab HAVx Light Chain
- Chain H
- Fab HAVx Heavy Chain
- Chain L
- Fab HAVx Light Chain
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