6MWN Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6MWN_001 | 1/A/624:632 | No text annotation | homologous HL_6MWN_003 HL_25061.1 | |
| HL_6MWN_005 | 1/A/650:656 | Pseudoknot geometry | homologous HL_6MWN_004 HL_30680.3 | |
| HL_6MWN_003 | 1/B/624:632 | No text annotation HL_25061.1 | ||
| HL_6MWN_004 | 1/B/650:656 | Pseudoknot geometry HL_30680.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6MWN_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6MWN_001 | 1/A/604:607, 1/A/670:675 | Kink-turn related | homologous IL_6MWN_004 IL_70096.1 | |
| IL_6MWN_002 | 1/A/643:646, 1/A/661:664 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_77658.1 | |
| IL_6MWN_007 | 1/A/647:648, 1/A/658:660 | Single bulged U | homologous IL_6MWN_006 IL_89505.4 | |
| IL_6MWN_004 | 1/B/604:607, 1/B/670:675 | Kink-turn related IL_70096.1 | ||
| IL_6MWN_005 | 1/B/643:646, 1/B/661:664 | Tandem non-canonical cWW pairs IL_77658.1 | ||
| IL_6MWN_006 | 1/B/646:647, 1/B/659:661 | Single bulged U IL_89505.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6MWN_003 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6MWN_001 | 1/A/610:617, 1/A/639:641, 1/A/666:667 | No text annotation | homologous J3_6MWN_002 J3_93059.1 | |
| J3_6MWN_002 | 1/B/610:617, 1/B/639:641, 1/B/666:667 | No text annotation J3_93059.1 |
Problematic loops
No problematic loops
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