HL_6N1D_003

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_003 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.3607

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6N1D|1|A16S|G|158
6N1D|1|A16S|G|159
6N1D|1|A16S|A|160
6N1D|1|A16S|A|161
6N1D|1|A16S|A|162
6N1D|1|A16S|C|163

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AL19

50S ribosomal protein L19

Chain AS20

30S ribosomal protein S20