6N1D Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6N1D_001 | 1/A16S/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_6N1D_002 | 1/A16S/78:91 | No text annotation | ||
| HL_6N1D_003 | 1/A16S/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6N1D_004 | 1/A16S/186F:186K | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_6N1D_005 | 1/A16S/201:216 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6N1D_006 | 1/A16S/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6N1D_007 | 1/A16S/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_6N1D_008 | 1/A16S/320:333 | No text annotation | homologous HL_6CZR_079 NA | |
| HL_6N1D_009 | 1/A16S/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_6N1D_010 | 1/A16S/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6N1D_011 | 1/A16S/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6N1D_012 | 1/A16S/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6N1D_013 | 1/A16S/522:527 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_6N1D_014 | 1/A16S/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6N1D_015 | 1/A16S/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_6N1D_016 | 1/A16S/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_6N1D_017 | 1/A16S/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_6N1D_018 | 1/A16S/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_6N1D_019 | 1/A16S/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6N1D_020 | 1/A16S/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_6N1D_021 | 1/A16S/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6N1D_022 | 1/A16S/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6N1D_023 | 1/A16S/1028B:1028G | No text annotation | homologous HL_4LFB_023 NA | |
| HL_6N1D_024 | 1/A16S/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6N1D_025 | 1/A16S/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6N1D_026 | 1/A16S/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6N1D_027 | 1/A16S/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6N1D_028 | 1/A16S/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_6N1D_029 | 1/A16S/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6N1D_030 | 1/A16S/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6N1D_031 | 1/A16S/1440G:1440L | No text annotation | homologous HL_6CZR_102 NA | |
| HL_6N1D_032 | 1/A16S/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_6N1D_033 | 1/A23S/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
| HL_6N1D_034 | 1/A23S/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6N1D_035 | 1/A23S/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6N1D_036 | 1/A23S/137A:137F | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6N1D_037 | 1/A23S/155:171 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6N1D_038 | 1/A23S/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_6N1D_039 | 1/A23S/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_6N1D_040 | 1/A23S/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_6N1D_041 | 1/A23S/270J:270P | No text annotation | homologous HL_8VTW_008 NA | |
| HL_6N1D_042 | 1/A23S/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6N1D_043 | 1/A23S/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6N1D_044 | 1/A23S/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6N1D_045 | 1/A23S/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_6N1D_046 | 1/A23S/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6N1D_047 | 1/A23S/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_6N1D_048 | 1/A23S/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_6N1D_049 | 1/A23S/543:550 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6N1D_050 | 1/A23S/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6N1D_051 | 1/A23S/611A:611G | No text annotation | geometric HL_4WF9_011 HL_75660.5 | |
| HL_6N1D_052 | 1/A23S/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_6N1D_053 | 1/A23S/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6N1D_054 | 1/A23S/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6N1D_055 | 1/A23S/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6N1D_056 | 1/A23S/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6N1D_057 | 1/A23S/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
| HL_6N1D_058 | 1/A23S/884:892 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6N1D_059 | 1/A23S/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
| HL_6N1D_060 | 1/A23S/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6N1D_061 | 1/A23S/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_6N1D_062 | 1/A23S/1092:1099 | No text annotation | homologous HL_7RQB_030 NA | |
| HL_6N1D_063 | 1/A23S/1171:1178 | No text annotation | ||
| HL_6N1D_064 | 1/A23S/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6N1D_065 | 1/A23S/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6N1D_066 | 1/A23S/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6N1D_067 | 1/A23S/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_6N1D_068 | 1/A23S/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6N1D_069 | 1/A23S/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_6N1D_070 | 1/A23S/1492:1498 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6N1D_071 | 1/A23S/1533:1538 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6N1D_072 | 1/A23S/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6N1D_073 | 1/A23S/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_6N1D_074 | 1/A23S/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6N1D_075 | 1/A23S/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6N1D_076 | 1/A23S/1712F:1712L | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6N1D_077 | 1/A23S/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6N1D_078 | 1/A23S/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_6N1D_079 | 1/A23S/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6N1D_080 | 1/A23S/1864:1878 | GNRA | homologous HL_7A0S_047 HL_37824.7 | |
| HL_6N1D_081 | 1/A23S/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6N1D_082 | 1/A23S/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6N1D_083 | 1/A23S/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6N1D_084 | 1/A23S/2143:2148 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_6N1D_085 | 1/A23S/2202B:2202G | No text annotation | homologous HL_8VTW_051 NA | |
| HL_6N1D_086 | 1/A23S/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6N1D_087 | 1/A23S/2264:2276 | No text annotation | homologous HL_7A0S_053 HL_91939.2 | |
| HL_6N1D_088 | 1/A23S/2303:2313 | No text annotation | homologous HL_4WF9_051 NA | |
| HL_6N1D_089 | 1/A23S/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6N1D_090 | 1/A23S/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6N1D_091 | 1/A23S/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_6N1D_092 | 1/A23S/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_6N1D_093 | 1/A23S/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_6N1D_094 | 1/A23S/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6N1D_095 | 1/A23S/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_6N1D_096 | 1/A23S/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6N1D_097 | 1/A23S/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_6N1D_098 | 1/A23S/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6N1D_099 | 1/A23S/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6N1D_100 | 1/A23S/2794:2802 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6N1D_101 | 1/A23S/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6N1D_102 | 1/A23S/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6N1D_103 | 1/A5S/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_6N1D_104 | 1/A5S/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_6N1D_105 | 1/APTN/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_6N1D_106 | 1/APTN/31:39 | tRNA anticodon loop | homologous HL_4V9Q_214 HL_06059.6 | |
| HL_6N1D_107 | 1/APTN/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.8 | |
| HL_6N1D_108 | 1/B16S/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6N1D_109 | 1/B16S/78:91 | No text annotation | geometric HL_4WF9_009 HL_81100.2 | |
| HL_6N1D_110 | 1/B16S/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6N1D_224 | 1/B16S/186F:186K | No text annotation | homologous HL_6CZR_075 NA | |
| HL_6N1D_112 | 1/B16S/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_6N1D_113 | 1/B16S/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6N1D_114 | 1/B16S/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6N1D_115 | 1/B16S/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6N1D_116 | 1/B16S/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6N1D_117 | 1/B16S/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_6N1D_118 | 1/B16S/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6N1D_119 | 1/B16S/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6N1D_120 | 1/B16S/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6N1D_121 | 1/B16S/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_6N1D_122 | 1/B16S/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6N1D_123 | 1/B16S/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_6N1D_124 | 1/B16S/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
| HL_6N1D_125 | 1/B16S/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_6N1D_126 | 1/B16S/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_6N1D_127 | 1/B16S/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6N1D_128 | 1/B16S/963:972 | No text annotation | homologous HL_6CZR_092 NA | |
| HL_6N1D_129 | 1/B16S/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6N1D_130 | 1/B16S/1028:1033 | No text annotation | ||
| HL_6N1D_131 | 1/B16S/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6N1D_132 | 1/B16S/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6N1D_133 | 1/B16S/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_6N1D_134 | 1/B16S/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6N1D_135 | 1/B16S/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_6N1D_136 | 1/B16S/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6N1D_137 | 1/B16S/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6N1D_138 | 1/B16S/1440G:1440L | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6N1D_139 | 1/B16S/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6N1D_140 | 1/B23S/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
| HL_6N1D_141 | 1/B23S/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6N1D_142 | 1/B23S/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6N1D_143 | 1/B23S/137A:137F | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6N1D_144 | 1/B23S/155:171 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6N1D_145 | 1/B23S/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_6N1D_146 | 1/B23S/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_6N1D_147 | 1/B23S/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_6N1D_221 | 1/B23S/270:270 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_6N1D_149 | 1/B23S/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6N1D_150 | 1/B23S/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_6N1D_151 | 1/B23S/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6N1D_152 | 1/B23S/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_6N1D_153 | 1/B23S/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6N1D_154 | 1/B23S/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.7 | |
| HL_6N1D_155 | 1/B23S/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_6N1D_156 | 1/B23S/543:550 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_6N1D_157 | 1/B23S/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_6N1D_158 | 1/B23S/611A:611G | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6N1D_159 | 1/B23S/629:634 | GNRA | homologous HL_4WF9_020 HL_37824.7 | |
| HL_6N1D_160 | 1/B23S/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_6N1D_161 | 1/B23S/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6N1D_162 | 1/B23S/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6N1D_163 | 1/B23S/779:785 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_6N1D_164 | 1/B23S/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6N1D_166 | 1/B23S/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
| HL_6N1D_167 | 1/B23S/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6N1D_168 | 1/B23S/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_6N1D_169 | 1/B23S/1092:1099 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_6N1D_170 | 1/B23S/1171:1178 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_6N1D_171 | 1/B23S/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6N1D_172 | 1/B23S/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.8 | |
| HL_6N1D_173 | 1/B23S/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6N1D_174 | 1/B23S/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6N1D_175 | 1/B23S/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6N1D_176 | 1/B23S/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_6N1D_177 | 1/B23S/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_6N1D_178 | 1/B23S/1533:1538 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6N1D_179 | 1/B23S/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6N1D_180 | 1/B23S/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6N1D_181 | 1/B23S/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6N1D_182 | 1/B23S/1691:1696 | UNCG | homologous HL_7A0S_042 HL_34617.5 | |
| HL_6N1D_183 | 1/B23S/1712F:1712L | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6N1D_184 | 1/B23S/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6N1D_185 | 1/B23S/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_6N1D_186 | 1/B23S/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6N1D_187 | 1/B23S/1864:1878 | GNRA | homologous HL_7A0S_047 HL_37824.7 | |
| HL_6N1D_188 | 1/B23S/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6N1D_189 | 1/B23S/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6N1D_190 | 1/B23S/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6N1D_191 | 1/B23S/2143:2148 | UNCG | homologous HL_3U4M_001 HL_34617.5 | |
| HL_6N1D_192 | 1/B23S/2202B:2202G | No text annotation | geometric HL_5TBW_004 NA | |
| HL_6N1D_193 | 1/B23S/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_6N1D_194 | 1/B23S/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6N1D_225 | 1/B23S/2304:2312 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
| HL_6N1D_196 | 1/B23S/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6N1D_197 | 1/B23S/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6N1D_198 | 1/B23S/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_6N1D_199 | 1/B23S/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_6N1D_200 | 1/B23S/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_6N1D_201 | 1/B23S/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6N1D_202 | 1/B23S/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6N1D_203 | 1/B23S/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6N1D_204 | 1/B23S/2658:2663 | GNRA | homologous HL_4WF9_060 HL_37824.7 | |
| HL_6N1D_205 | 1/B23S/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6N1D_206 | 1/B23S/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6N1D_207 | 1/B23S/2794:2802 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6N1D_208 | 1/B23S/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_6N1D_209 | 1/B23S/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_6N1D_222 | 1/B5S/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_6N1D_210 | 1/B5S/38:44 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6N1D_211 | 1/B5S/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_6N1D_212 | 1/BATN/12:23 | No text annotation | homologous HL_5IB8_207 NA | |
| HL_6N1D_223 | 1/BATN/31:39 | tRNA anticodon loop | homologous HL_5E81_235 HL_06059.6 | |
| HL_6N1D_216 | 1/BPTN/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 | |
| HL_6N1D_217 | 1/BPTN/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.6 | |
| HL_6N1D_218 | 1/BPTN/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1SER_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6N1D_219 | No text annotation | ||
| HL_6N1D_111 | No text annotation | ||
| HL_6N1D_220 | No text annotation | ||
| HL_6N1D_148 | No text annotation | ||
| HL_6N1D_165 | No text annotation | ||
| HL_6N1D_195 | No text annotation | ||
| HL_6N1D_213 | No text annotation | ||
| HL_6N1D_214 | No text annotation | ||
| HL_6N1D_215 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6N1D_001 | 1/A16S/30:32, 1/A16S/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_6N1D_002 | 1/A16S/44:45, 1/A16S/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
| IL_6N1D_003 | 1/A16S/47:52, 1/A16S/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_6N1D_004 | 1/A16S/54:56, 1/A16S/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6N1D_005 | 1/A16S/63:66, 1/A16S/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_6N1D_006 | 1/A16S/67:69, 1/A16S/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6N1D_007 | 1/A16S/129:131, 1/A16S/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_6N1D_008 | 1/A16S/132:136, 1/A16S/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6N1D_009 | 1/A16S/148:153, 1/A16S/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6N1D_010 | 1/A16S/186:186B, 1/A16S/186O:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6N1D_011 | 1/A16S/242:247, 1/A16S/277:284 | Kink-turn with non-sequential stacking | homologous IL_6CZR_123 NA | |
| IL_6N1D_012 | 1/A16S/249:252, 1/A16S/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6N1D_013 | 1/A16S/292:293, 1/A16S/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6N1D_014 | 1/A16S/367:369, 1/A16S/392:393 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_6N1D_015 | 1/A16S/371:375, 1/A16S/389:390 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_6N1D_016 | 1/A16S/375:376, 1/A16S/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_6N1D_017 | 1/A16S/409:416, 1/A16S/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6N1D_018 | 1/A16S/446:450, 1/A16S/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_6N1D_019 | 1/A16S/450:455, 1/A16S/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_6N1D_020 | 1/A16S/504:511, 1/A16S/540:541 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_6N1D_021 | 1/A16S/515:521, 1/A16S/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6N1D_022 | 1/A16S/569:575, 1/A16S/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6N1D_023 | 1/A16S/580:584, 1/A16S/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_6N1D_024 | 1/A16S/594:596, 1/A16S/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6N1D_025 | 1/A16S/597:598, 1/A16S/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_6N1D_026 | 1/A16S/605:612, 1/A16S/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6N1D_027 | 1/A16S/654:655, 1/A16S/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_6N1D_028 | 1/A16S/657:658, 1/A16S/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6N1D_029 | 1/A16S/662:666, 1/A16S/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_6N1D_344 | 1/A16S/673:677, 1/A16S/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_6N1D_031 | 1/A16S/683:688, 1/A16S/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_6N1D_032 | 1/A16S/774:778, 1/A16S/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6N1D_033 | 1/A16S/779:783, 1/A16S/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_6N1D_034 | 1/A16S/887:894, 1/A16S/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6N1D_035 | 1/A16S/922:923, 1/A16S/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_6N1D_036 | 1/A16S/925:927, 1/A16S/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6N1D_037 | 1/A16S/933:935, 1/A16S/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6N1D_038 | 1/A16S/953:954, 1/A16S/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6N1D_039 | 1/A16S/993:997, 1/A16S/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_6N1D_040 | 1/A16S/1048:1050, 1/A16S/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_6N1D_041 | 1/A16S/1052:1056, 1/A16S/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6N1D_042 | 1/A16S/1057:1058, 1/A16S/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6N1D_043 | 1/A16S/1060:1061, 1/A16S/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_6N1D_044 | 1/A16S/1061:1063, 1/A16S/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_87907.2 | |
| IL_6N1D_045 | 1/A16S/1124:1127, 1/A16S/1145:1149 | No text annotation | ||
| IL_6N1D_046 | 1/A16S/1127:1128, 1/A16S/1143:1145 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6N1D_047 | 1/A16S/1128:1132, 1/A16S/1142:1143 | Minor groove platform | geometric IL_4LFB_049 IL_15052.4 | |
| IL_6N1D_048 | 1/A16S/1158:1161, 1/A16S/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_6N1D_049 | 1/A16S/1247:1253, 1/A16S/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_6N1D_050 | 1/A16S/1255:1258, 1/A16S/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6N1D_051 | 1/A16S/1259:1260, 1/A16S/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_6N1D_052 | 1/A16S/1260:1262, 1/A16S/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_51454.3 | |
| IL_6N1D_053 | 1/A16S/1303:1309, 1/A16S/1328:1334 | No text annotation | ||
| IL_6N1D_054 | 1/A16S/1399:1401, 1/A16S/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6N1D_368 | 1/A16S/1401:1404, 1/A16S/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_6N1D_056 | 1/A16S/1405:1407, 1/A16S/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_87907.2 | |
| IL_6N1D_057 | 1/A16S/1407:1409, 1/A16S/1491:1494 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_6N1D_058 | 1/A16S/1412:1414, 1/A16S/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
| IL_6N1D_059 | 1/A16S/1416:1419, 1/A16S/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_6N1D_060 | 1/A16S/1431:1435, 1/A16S/1466:1469 | UAA/GAN variation | homologous IL_6CZR_170 NA | |
| IL_6N1D_061 | 1/A16S/1435:1437, 1/A16S/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_6N1D_062 | 1/A16S/1440:1440E, 1/A16S/1440N:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_6N1D_063 | 1/A23S/24:30, 1/A23S/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_6N1D_064 | 1/A23S/36:37, 1/A23S/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6N1D_065 | 1/A23S/43:44, 1/A23S/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6N1D_066 | 1/A23S/81:85, 1/A23S/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6N1D_067 | 1/A23S/183:184, 1/A23S/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6N1D_068 | 1/A23S/188:194, 1/A23S/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_04346.10 | |
| IL_6N1D_069 | 1/A23S/239:245, 1/A23S/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6N1D_070 | 1/A23S/271F:271G, 1/A23S/357K:357M | No text annotation | ||
| IL_6N1D_071 | 1/A23S/271L:271Q, 1/A23S/357E:357F | No text annotation | ||
| IL_6N1D_072 | 1/A23S/271S:283, 1/A23S/357:357C | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6N1D_073 | 1/A23S/287:290, 1/A23S/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6N1D_074 | 1/A23S/293:295, 1/A23S/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6N1D_075 | 1/A23S/481:484, 1/A23S/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_6N1D_076 | 1/A23S/564:566, 1/A23S/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_6N1D_077 | 1/A23S/606:610, 1/A23S/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6N1D_078 | 1/A23S/672:674, 1/A23S/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6N1D_079 | 1/A23S/674:678, 1/A23S/799:806 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_54041.2 | |
| IL_6N1D_080 | 1/A23S/697:698, 1/A23S/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6N1D_081 | 1/A23S/702:703, 1/A23S/728:730 | Single bulged G | homologous IL_4WF9_023 IL_00225.13 | |
| IL_6N1D_082 | 1/A23S/703:707, 1/A23S/724:728 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_6N1D_083 | 1/A23S/738:741, 1/A23S/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6N1D_084 | 1/A23S/775:777, 1/A23S/787:791 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_6N1D_085 | 1/A23S/837:838, 1/A23S/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_6N1D_086 | 1/A23S/844:846, 1/A23S/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_6N1D_087 | 1/A23S/846:850, 1/A23S/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_6N1D_346 | 1/A23S/858:862, 1/A23S/915:919 | No text annotation | homologous IL_7A0S_111 IL_38862.4 | |
| IL_6N1D_089 | 1/A23S/862:863, 1/A23S/913:915 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_6N1D_090 | 1/A23S/864:868, 1/A23S/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6N1D_091 | 1/A23S/875:877, 1/A23S/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6N1D_092 | 1/A23S/877:879, 1/A23S/898:899 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_6N1D_093 | 1/A23S/880:881, 1/A23S/895:897 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_6N1D_094 | 1/A23S/952:954, 1/A23S/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_6N1D_095 | 1/A23S/994:996, 1/A23S/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6N1D_096 | 1/A23S/998:1002, 1/A23S/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6N1D_097 | 1/A23S/1004:1011, 1/A23S/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
| IL_6N1D_098 | 1/A23S/1011:1013, 1/A23S/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_6N1D_100 | 1/A23S/1024:1030, 1/A23S/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6N1D_101 | 1/A23S/1031:1034, 1/A23S/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6N1D_102 | 1/A23S/1043:1051, 1/A23S/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6N1D_103 | 1/A23S/1059:1062, 1/A23S/1076:1079 | No text annotation | ||
| IL_6N1D_104 | 1/A23S/1087:1091, 1/A23S/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_6N1D_105 | 1/A23S/1196:1198, 1/A23S/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_6N1D_347 | 1/A23S/1202:1206, 1/A23S/1240:1243 | No text annotation | ||
| IL_6N1D_107 | 1/A23S/1208:1215, 1/A23S/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
| IL_6N1D_108 | 1/A23S/1219:1220, 1/A23S/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6N1D_109 | 1/A23S/1262:1269, 1/A23S/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6N1D_110 | 1/A23S/1310:1313, 1/A23S/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6N1D_111 | 1/A23S/1319:1323, 1/A23S/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_6N1D_112 | 1/A23S/1351:1355, 1/A23S/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6N1D_113 | 1/A23S/1357:1361, 1/A23S/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_6N1D_114 | 1/A23S/1415:1416, 1/A23S/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6N1D_115 | 1/A23S/1417:1421, 1/A23S/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_6N1D_348 | 1/A23S/1433:1435, 1/A23S/1557:1560 | No text annotation | homologous IL_9DFE_055 IL_67095.2 | |
| IL_6N1D_117 | 1/A23S/1437:1440, 1/A23S/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6N1D_118 | 1/A23S/1448:1449, 1/A23S/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_6N1D_120 | 1/A23S/1468M:1483, 1/A23S/1506:1506E | No text annotation | homologous IL_7RQB_061 NA | |
| IL_6N1D_119 | 1/A23S/1468A:1468E, 1/A23S/1506M:1506P | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6N1D_121 | 1/A23S/1489:1491, 1/A23S/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6N1D_122 | 1/A23S/1526:1530, 1/A23S/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6N1D_123 | 1/A23S/1651:1656, 1/A23S/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6N1D_124 | 1/A23S/1663:1665, 1/A23S/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6N1D_125 | 1/A23S/1666:1669, 1/A23S/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_50694.7 | |
| IL_6N1D_350 | 1/A23S/1666:1674, 1/A23S/1990:1994 | No text annotation | homologous IL_7A0S_109 IL_22854.4 | |
| IL_6N1D_126 | 1/A23S/1669:1674, 1/A23S/1990:1993 | Intercalated tWH | homologous IL_7A0S_062 IL_76758.2 | |
| IL_6N1D_127 | 1/A23S/1686:1691, 1/A23S/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6N1D_128 | 1/A23S/1770:1771, 1/A23S/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6N1D_129 | 1/A23S/1798:1804, 1/A23S/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_6N1D_130 | 1/A23S/1837:1840, 1/A23S/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6N1D_131 | 1/A23S/1841:1842, 1/A23S/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6N1D_132 | 1/A23S/1846:1849, 1/A23S/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6N1D_133 | 1/A23S/1851:1856, 1/A23S/1886:1891 | No text annotation | ||
| IL_6N1D_351 | 1/A23S/1851:1860, 1/A23S/1882:1891 | No text annotation | ||
| IL_6N1D_134 | 1/A23S/1856:1860, 1/A23S/1882:1886 | Triple sheared | homologous IL_7A0S_070 IL_50730.2 | |
| IL_6N1D_135 | 1/A23S/1933:1934, 1/A23S/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 IL_22551.4 | |
| IL_6N1D_136 | 1/A23S/1934:1945, 1/A23S/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
| IL_6N1D_137 | 1/A23S/2050:2052, 1/A23S/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_6N1D_138 | 1/A23S/2067:2069, 1/A23S/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_6N1D_139 | 1/A23S/2070:2071, 1/A23S/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6N1D_140 | 1/A23S/2081:2083, 1/A23S/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6N1D_141 | 1/A23S/2085:2087, 1/A23S/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6N1D_142 | 1/A23S/2108:2110, 1/A23S/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4KNQ_002 IL_87907.2 | |
| IL_6N1D_143 | 1/A23S/2110:2120, 1/A23S/2178:2179 | No text annotation | homologous IL_7RQB_085 NA | |
| IL_6N1D_144 | 1/A23S/2124:2127, 1/A23S/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_6N1D_145 | 1/A23S/2129:2137, 1/A23S/2154:2159 | No text annotation | ||
| IL_6N1D_146 | 1/A23S/2297:2299, 1/A23S/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_6N1D_147 | 1/A23S/2350:2353, 1/A23S/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6N1D_148 | 1/A23S/2401:2403, 1/A23S/2414:2415 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_6N1D_149 | 1/A23S/2453:2454, 1/A23S/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6N1D_150 | 1/A23S/2454:2455, 1/A23S/2496:2498 | Major groove platform | geometric IL_5J7L_320 IL_48076.6 | |
| IL_6N1D_352 | 1/A23S/2457:2459, 1/A23S/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_6N1D_152 | 1/A23S/2459:2461, 1/A23S/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_51387.2 | |
| IL_6N1D_153 | 1/A23S/2466:2470, 1/A23S/2480:2484 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
| IL_6N1D_154 | 1/A23S/2510:2512, 1/A23S/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_6N1D_155 | 1/A23S/2512:2513, 1/A23S/2571:2574 | Multiple bulged bases | geometric IL_7A0S_090 IL_42626.2 | |
| IL_6N1D_156 | 1/A23S/2522:2523, 1/A23S/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6N1D_157 | 1/A23S/2591:2592, 1/A23S/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6N1D_158 | 1/A23S/2636:2640, 1/A23S/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6N1D_159 | 1/A23S/2652:2658, 1/A23S/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_6N1D_160 | 1/A23S/2680:2684, 1/A23S/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6N1D_161 | 1/A23S/2687:2691, 1/A23S/2718:2722 | No text annotation | homologous IL_7A0S_096 IL_23774.1 | |
| IL_6N1D_162 | 1/A23S/2695:2696, 1/A23S/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6N1D_163 | 1/A23S/2737:2742, 1/A23S/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6N1D_164 | 1/A23S/2838:2839, 1/A23S/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6N1D_165 | 1/A23S/2843:2845, 1/A23S/2871:2874 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
| IL_6N1D_369 | 1/A23S/2847:2852, 1/A23S/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_6N1D_167 | 1/A5S/17:18, 1/A5S/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_6N1D_168 | 1/A5S/23:28, 1/A5S/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6N1D_170 | 1/A5S/34:38, 1/A5S/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_6N1D_171 | 1/A5S/71:79, 1/A5S/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_6N1D_172 | 1/B16S/30:32, 1/B16S/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_6N1D_173 | 1/B16S/44:45, 1/B16S/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_6N1D_174 | 1/B16S/47:52, 1/B16S/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_6N1D_175 | 1/B16S/54:56, 1/B16S/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6N1D_176 | 1/B16S/63:66, 1/B16S/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_6N1D_177 | 1/B16S/67:69, 1/B16S/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6N1D_354 | 1/B16S/129:131, 1/B16S/231:232 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_6N1D_179 | 1/B16S/132:136, 1/B16S/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6N1D_180 | 1/B16S/148:153, 1/B16S/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6N1D_181 | 1/B16S/186:186B, 1/B16S/186O:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6N1D_182 | 1/B16S/242:247, 1/B16S/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6N1D_183 | 1/B16S/249:252, 1/B16S/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6N1D_184 | 1/B16S/292:293, 1/B16S/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6N1D_185 | 1/B16S/367:369, 1/B16S/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_6N1D_186 | 1/B16S/371:375, 1/B16S/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6N1D_187 | 1/B16S/375:376, 1/B16S/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_6N1D_188 | 1/B16S/409:416, 1/B16S/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6N1D_189 | 1/B16S/446:450, 1/B16S/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_6N1D_190 | 1/B16S/450:455, 1/B16S/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_6N1D_191 | 1/B16S/504:511, 1/B16S/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6N1D_192 | 1/B16S/515:521, 1/B16S/528:536 | Kink-turn related | homologous IL_6CZR_133 NA | |
| IL_6N1D_193 | 1/B16S/569:575, 1/B16S/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_6N1D_194 | 1/B16S/580:584, 1/B16S/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6N1D_195 | 1/B16S/594:596, 1/B16S/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6N1D_196 | 1/B16S/597:598, 1/B16S/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_6N1D_355 | 1/B16S/605:612, 1/B16S/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6N1D_198 | 1/B16S/654:655, 1/B16S/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_6N1D_199 | 1/B16S/657:658, 1/B16S/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6N1D_200 | 1/B16S/662:666, 1/B16S/740:743 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_6N1D_356 | 1/B16S/673:677, 1/B16S/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_6N1D_202 | 1/B16S/683:688, 1/B16S/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_6N1D_203 | 1/B16S/774:778, 1/B16S/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6N1D_204 | 1/B16S/779:783, 1/B16S/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_6N1D_205 | 1/B16S/887:894, 1/B16S/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6N1D_206 | 1/B16S/922:923, 1/B16S/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_6N1D_207 | 1/B16S/925:927, 1/B16S/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_6N1D_208 | 1/B16S/933:935, 1/B16S/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_6N1D_209 | 1/B16S/953:954, 1/B16S/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_6N1D_210 | 1/B16S/993:997, 1/B16S/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_6N1D_211 | 1/B16S/1048:1050, 1/B16S/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_6N1D_358 | 1/B16S/1052:1056, 1/B16S/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6N1D_213 | 1/B16S/1057:1058, 1/B16S/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6N1D_214 | 1/B16S/1060:1061, 1/B16S/1195:1197 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6N1D_215 | 1/B16S/1061:1063, 1/B16S/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_87907.2 | |
| IL_6N1D_216 | 1/B16S/1124:1127, 1/B16S/1145:1149 | No text annotation | ||
| IL_6N1D_217 | 1/B16S/1127:1128, 1/B16S/1143:1145 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6N1D_218 | 1/B16S/1128:1132, 1/B16S/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6N1D_219 | 1/B16S/1158:1161, 1/B16S/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6N1D_220 | 1/B16S/1247:1253, 1/B16S/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_6N1D_221 | 1/B16S/1255:1258, 1/B16S/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6N1D_222 | 1/B16S/1259:1262, 1/B16S/1273:1276 | Double sheared | geometric IL_4V88_471 NA | |
| IL_6N1D_223 | 1/B16S/1303:1308, 1/B16S/1329:1334 | No text annotation | geometric IL_4V88_462 NA | |
| IL_6N1D_224 | 1/B16S/1399:1401, 1/B16S/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_6N1D_225 | 1/B16S/1401:1404, 1/B16S/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6N1D_226 | 1/B16S/1405:1407, 1/B16S/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
| IL_6N1D_227 | 1/B16S/1407:1409, 1/B16S/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6N1D_228 | 1/B16S/1412:1414, 1/B16S/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6N1D_229 | 1/B16S/1416:1419, 1/B16S/1481:1484 | Double sheared | homologous IL_6CZR_169 NA | |
| IL_6N1D_230 | 1/B16S/1431:1435, 1/B16S/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_6N1D_231 | 1/B16S/1435:1437, 1/B16S/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_6N1D_232 | 1/B16S/1440:1440G, 1/B16S/1440L:1461 | No text annotation | ||
| IL_6N1D_233 | 1/B23S/24:30, 1/B23S/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6N1D_234 | 1/B23S/36:37, 1/B23S/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6N1D_235 | 1/B23S/43:44, 1/B23S/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6N1D_236 | 1/B23S/81:85, 1/B23S/97:105 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
| IL_6N1D_237 | 1/B23S/183:184, 1/B23S/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6N1D_238 | 1/B23S/188:194, 1/B23S/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6N1D_239 | 1/B23S/239:245, 1/B23S/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6N1D_359 | 1/B23S/271:271, 1/B23S/357:357 | Major groove platform | homologous IL_9DFE_008 IL_48076.6 | |
| IL_6N1D_241 | 1/B23S/271L:271Q, 1/B23S/357E:357F | No text annotation | ||
| IL_6N1D_242 | 1/B23S/271S:283, 1/B23S/357:357C | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6N1D_243 | 1/B23S/287:290, 1/B23S/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6N1D_244 | 1/B23S/293:295, 1/B23S/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6N1D_245 | 1/B23S/481:484, 1/B23S/496:509 | No text annotation | geometric IL_7A0S_009 IL_81516.2 | |
| IL_6N1D_246 | 1/B23S/564:566, 1/B23S/575:577 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_6N1D_247 | 1/B23S/606:610, 1/B23S/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6N1D_248 | 1/B23S/672:674, 1/B23S/806:808 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_6N1D_249 | 1/B23S/674:678, 1/B23S/799:806 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_54041.2 | |
| IL_6N1D_250 | 1/B23S/697:698, 1/B23S/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6N1D_251 | 1/B23S/702:703, 1/B23S/728:730 | Single bulged G | homologous IL_4WF9_023 IL_00225.13 | |
| IL_6N1D_252 | 1/B23S/703:707, 1/B23S/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6N1D_253 | 1/B23S/738:741, 1/B23S/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6N1D_254 | 1/B23S/775:777, 1/B23S/787:791 | Multiple bulged bases | geometric IL_7A0S_021 IL_06549.2 | |
| IL_6N1D_255 | 1/B23S/836:838, 1/B23S/940:943 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_6N1D_256 | 1/B23S/844:846, 1/B23S/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_6N1D_257 | 1/B23S/846:850, 1/B23S/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_6N1D_360 | 1/B23S/858:862, 1/B23S/915:919 | No text annotation | homologous IL_7A0S_111 IL_38862.4 | |
| IL_6N1D_259 | 1/B23S/862:863, 1/B23S/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_6N1D_260 | 1/B23S/864:868, 1/B23S/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6N1D_261 | 1/B23S/875:877, 1/B23S/899:902 | Minor groove platform with extra cWW | homologous IL_7RQB_031 NA | |
| IL_6N1D_262 | 1/B23S/877:879, 1/B23S/898:899 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6N1D_263 | 1/B23S/880:881, 1/B23S/895:897 | No text annotation | homologous IL_5J7L_275 NA | |
| IL_6N1D_264 | 1/B23S/952:954, 1/B23S/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_6N1D_265 | 1/B23S/994:996, 1/B23S/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6N1D_266 | 1/B23S/998:1002, 1/B23S/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_6N1D_267 | 1/B23S/1004:1011, 1/B23S/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_6N1D_268 | 1/B23S/1011:1013, 1/B23S/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_6N1D_270 | 1/B23S/1024:1030, 1/B23S/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6N1D_271 | 1/B23S/1031:1034, 1/B23S/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_6N1D_272 | 1/B23S/1043:1052, 1/B23S/1107:1112 | No text annotation | ||
| IL_6N1D_273 | 1/B23S/1059:1062, 1/B23S/1076:1079 | No text annotation | ||
| IL_6N1D_274 | 1/B23S/1087:1091, 1/B23S/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_6N1D_275 | 1/B23S/1196:1198, 1/B23S/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
| IL_6N1D_276 | 1/B23S/1202:1206, 1/B23S/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6N1D_277 | 1/B23S/1208:1215, 1/B23S/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6N1D_278 | 1/B23S/1219:1220, 1/B23S/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6N1D_279 | 1/B23S/1262:1269, 1/B23S/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6N1D_280 | 1/B23S/1310:1313, 1/B23S/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6N1D_281 | 1/B23S/1319:1323, 1/B23S/1331:1333 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
| IL_6N1D_282 | 1/B23S/1351:1355, 1/B23S/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6N1D_283 | 1/B23S/1357:1361, 1/B23S/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_6N1D_284 | 1/B23S/1415:1416, 1/B23S/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6N1D_285 | 1/B23S/1417:1421, 1/B23S/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_6N1D_361 | 1/B23S/1433:1435, 1/B23S/1557:1560 | No text annotation | homologous IL_9DFE_055 IL_67095.2 | |
| IL_6N1D_287 | 1/B23S/1437:1440, 1/B23S/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6N1D_288 | 1/B23S/1448:1449, 1/B23S/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_6N1D_290 | 1/B23S/1468M:1483, 1/B23S/1506:1506E | No text annotation | homologous IL_9DFE_060 IL_46086.1 | |
| IL_6N1D_362 | 1/B23S/1468:1468, 1/B23S/1506:1506 | No text annotation | homologous IL_9DFE_059 IL_23774.1 | |
| IL_6N1D_291 | 1/B23S/1489:1491, 1/B23S/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6N1D_292 | 1/B23S/1526:1530, 1/B23S/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6N1D_293 | 1/B23S/1651:1656, 1/B23S/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6N1D_294 | 1/B23S/1663:1665, 1/B23S/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6N1D_295 | 1/B23S/1666:1669, 1/B23S/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6N1D_363 | 1/B23S/1666:1674, 1/B23S/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_6N1D_296 | 1/B23S/1669:1674, 1/B23S/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_6N1D_297 | 1/B23S/1686:1691, 1/B23S/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6N1D_298 | 1/B23S/1770:1771, 1/B23S/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
| IL_6N1D_299 | 1/B23S/1798:1804, 1/B23S/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.5 | |
| IL_6N1D_300 | 1/B23S/1837:1840, 1/B23S/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_6N1D_301 | 1/B23S/1841:1842, 1/B23S/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6N1D_302 | 1/B23S/1846:1849, 1/B23S/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6N1D_303 | 1/B23S/1851:1855, 1/B23S/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6N1D_304 | 1/B23S/1856:1860, 1/B23S/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6N1D_305 | 1/B23S/1933:1934, 1/B23S/1964:1967 | Bulged stacked bases | geometric IL_7A0S_071 IL_22551.4 | |
| IL_6N1D_306 | 1/B23S/1934:1945, 1/B23S/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_6N1D_307 | 1/B23S/2050:2052, 1/B23S/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6N1D_308 | 1/B23S/2054:2057, 1/B23S/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_6N1D_309 | 1/B23S/2067:2069, 1/B23S/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_6N1D_310 | 1/B23S/2070:2071, 1/B23S/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_6N1D_311 | 1/B23S/2081:2083, 1/B23S/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6N1D_312 | 1/B23S/2085:2087, 1/B23S/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_6N1D_313 | 1/B23S/2108:2110, 1/B23S/2179:2181 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_6N1D_314 | 1/B23S/2110:2120, 1/B23S/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_6N1D_315 | 1/B23S/2124:2127, 1/B23S/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_6N1D_316 | 1/B23S/2129:2136, 1/B23S/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_6N1D_317 | 1/B23S/2297:2299, 1/B23S/2317:2321 | Isolated tHS basepair with bulges | geometric IL_4V9F_080 IL_61476.2 | |
| IL_6N1D_318 | 1/B23S/2350:2353, 1/B23S/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6N1D_319 | 1/B23S/2401:2403, 1/B23S/2414:2415 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_6N1D_320 | 1/B23S/2453:2454, 1/B23S/2498:2500 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6N1D_321 | 1/B23S/2454:2455, 1/B23S/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.6 | |
| IL_6N1D_322 | 1/B23S/2457:2459, 1/B23S/2493:2494 | Major groove platform | geometric IL_7A0S_085 IL_48076.6 | |
| IL_6N1D_323 | 1/B23S/2459:2461, 1/B23S/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_6N1D_324 | 1/B23S/2466:2470, 1/B23S/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6N1D_325 | 1/B23S/2507:2508, 1/B23S/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_6N1D_326 | 1/B23S/2510:2512, 1/B23S/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6N1D_327 | 1/B23S/2512:2513, 1/B23S/2571:2574 | No text annotation | homologous IL_4WF9_096 IL_42626.2 | |
| IL_6N1D_328 | 1/B23S/2522:2523, 1/B23S/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6N1D_329 | 1/B23S/2591:2592, 1/B23S/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_6N1D_330 | 1/B23S/2636:2640, 1/B23S/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6N1D_331 | 1/B23S/2652:2658, 1/B23S/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_6N1D_332 | 1/B23S/2680:2684, 1/B23S/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6N1D_333 | 1/B23S/2687:2691, 1/B23S/2718:2722 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_6N1D_334 | 1/B23S/2695:2696, 1/B23S/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_6N1D_335 | 1/B23S/2737:2742, 1/B23S/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6N1D_336 | 1/B23S/2838:2839, 1/B23S/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6N1D_337 | 1/B23S/2843:2845, 1/B23S/2871:2874 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
| IL_6N1D_366 | 1/B23S/2847:2852, 1/B23S/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_6N1D_339 | 1/B5S/17:18, 1/B5S/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_6N1D_340 | 1/B5S/23:28, 1/B5S/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6N1D_341 | 1/B5S/30:31, 1/B5S/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6N1D_342 | 1/B5S/34:38, 1/B5S/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6N1D_343 | 1/B5S/71:79, 1/B5S/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6N1D_030 | No text annotation | ||
| IL_6N1D_345 | No text annotation | ||
| IL_6N1D_055 | No text annotation | ||
| IL_6N1D_088 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6N1D_099 | Kink-turn related | ||
| IL_6N1D_106 | No text annotation | ||
| IL_6N1D_116 | No text annotation | ||
| IL_6N1D_349 | No text annotation | ||
| IL_6N1D_151 | Major groove platform with extra pair | ||
| IL_6N1D_166 | No text annotation | ||
| IL_6N1D_169 | Major groove minor groove platform; mini C-loop | ||
| IL_6N1D_353 | Isolated non-canonical cWW pair | ||
| IL_6N1D_178 | Isolated non-canonical cWW pair | ||
| IL_6N1D_197 | No text annotation | ||
| IL_6N1D_201 | No text annotation | ||
| IL_6N1D_357 | No text annotation | ||
| IL_6N1D_212 | Tandem non-canonical cWW pairs | ||
| IL_6N1D_240 | Isolated non-canonical cWW with bulges | ||
| IL_6N1D_258 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6N1D_269 | Kink-turn related | ||
| IL_6N1D_286 | Tandem non-canonical cWW pairs | ||
| IL_6N1D_289 | No text annotation | ||
| IL_6N1D_364 | No text annotation | ||
| IL_6N1D_365 | No text annotation | ||
| IL_6N1D_338 | No text annotation | ||
| IL_6N1D_367 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6N1D_001 | 1/A16S/46:47, 1/A16S/361:367, 1/A16S/393:395 | No text annotation | homologous J3_6CZR_015 NA | |
| J3_6N1D_055 | 1/A16S/46:52, 1/A16S/359:367, 1/A16S/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6N1D_002 | 1/A16S/586:588, 1/A16S/651:654, 1/A16S/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6N1D_056 | 1/A16S/586:588, 1/A16S/651:655, 1/A16S/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6N1D_003 | 1/A16S/672:673, 1/A16S/717:725, 1/A16S/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6N1D_004 | 1/A16S/826:829, 1/A16S/857:861, 1/A16S/868:874 | No text annotation | homologous J3_6CZR_018 NA | |
| J3_6N1D_057 | 1/A16S/936:939, 1/A16S/1344:1350, 1/A16S/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6N1D_005 | 1/A16S/943:946, 1/A16S/1235:1237, 1/A16S/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_6N1D_006 | 1/A16S/955:962, 1/A16S/973:984, 1/A16S/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6N1D_007 | 1/A16S/990:993, 1/A16S/1045:1047, 1/A16S/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6N1D_058 | 1/A16S/990:997, 1/A16S/1044:1047, 1/A16S/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6N1D_008 | 1/A16S/1003:1006, 1/A16S/1023:1027, 1/A16S/1034:1037 | No text annotation | ||
| J3_6N1D_009 | 1/A16S/1063:1068, 1/A16S/1107:1113, 1/A16S/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6N1D_010 | 1/A16S/1073:1074, 1/A16S/1083:1087, 1/A16S/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_6N1D_011 | 1/A16S/1116:1118, 1/A16S/1155:1158, 1/A16S/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_6N1D_059 | 1/A16S/1116:1118, 1/A16S/1155:1161, 1/A16S/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6N1D_012 | 1/A16S/1237:1241, 1/A16S/1296:1303, 1/A16S/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6N1D_013 | 1/A23S/30:31, 1/A23S/474:481, 1/A23S/509:510 | No text annotation | homologous J3_7A0S_001 J3_60031.2 | |
| J3_6N1D_060 | 1/A23S/30:31, 1/A23S/474:484, 1/A23S/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_6N1D_061 | 1/A23S/32:35, 1/A23S/445:461, 1/A23S/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6N1D_014 | 1/A23S/56:57, 1/A23S/70:76, 1/A23S/110:114 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_6N1D_015 | 1/A23S/269:270C, 1/A23S/270W:271D, 1/A23S/357O:370 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_6N1D_062 | 1/A23S/269:270, 1/A23S/270:271, 1/A23S/357:370 | No text annotation | ||
| J3_6N1D_016 | 1/A23S/683:689, 1/A23S/773:775, 1/A23S/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_6N1D_017 | 1/A23S/698:700, 1/A23S/732:736, 1/A23S/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
| J3_6N1D_018 | 1/A23S/1055:1057, 1/A23S/1081:1087, 1/A23S/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_6N1D_019 | 1/A23S/1298:1303, 1/A23S/1625:1627, 1/A23S/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6N1D_020 | 1/A23S/1306:1309, 1/A23S/1605:1611, 1/A23S/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6N1D_021 | 1/A23S/1344:1350, 1/A23S/1381:1385, 1/A23S/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6N1D_063 | 1/A23S/1424:1429, 1/A23S/1564:1565, 1/A23S/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
| J3_6N1D_022 | 1/A23S/2091:2093, 1/A23S/2196:2200, 1/A23S/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6N1D_064 | 1/A23S/2282:2284, 1/A23S/2384:2395, 1/A23S/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6N1D_023 | 1/A23S/2295:2297, 1/A23S/2321:2323, 1/A23S/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6N1D_024 | 1/A23S/2517:2520, 1/A23S/2545:2547, 1/A23S/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6N1D_025 | 1/A23S/2814:2815, 1/A23S/2831:2836, 1/A23S/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_6N1D_026 | 1/A5S/11:16, 1/A5S/68:69, 1/A5S/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_6N1D_027 | 1/B16S/46:47, 1/B16S/361:367, 1/B16S/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6N1D_065 | 1/B16S/46:52, 1/B16S/359:367, 1/B16S/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6N1D_028 | 1/B16S/586:588, 1/B16S/651:654, 1/B16S/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6N1D_066 | 1/B16S/586:588, 1/B16S/651:655, 1/B16S/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6N1D_029 | 1/B16S/672:673, 1/B16S/717:725, 1/B16S/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_6N1D_030 | 1/B16S/826:829, 1/B16S/857:861, 1/B16S/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6N1D_031 | 1/B16S/936:939, 1/B16S/1344:1350, 1/B16S/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6N1D_032 | 1/B16S/943:946, 1/B16S/1235:1237, 1/B16S/1337:1340 | No text annotation | homologous J3_6CZR_019 NA | |
| J3_6N1D_033 | 1/B16S/955:962, 1/B16S/973:984, 1/B16S/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6N1D_034 | 1/B16S/990:993, 1/B16S/1045:1047, 1/B16S/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6N1D_035 | 1/B16S/1003:1006, 1/B16S/1023:1027, 1/B16S/1034:1037 | No text annotation | ||
| J3_6N1D_036 | 1/B16S/1063:1068, 1/B16S/1107:1113, 1/B16S/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6N1D_067 | 1/B16S/1073:1074, 1/B16S/1083:1086, 1/B16S/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6N1D_038 | 1/B16S/1116:1118, 1/B16S/1155:1158, 1/B16S/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_6N1D_068 | 1/B16S/1116:1118, 1/B16S/1155:1161, 1/B16S/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6N1D_039 | 1/B16S/1237:1241, 1/B16S/1296:1303, 1/B16S/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6N1D_040 | 1/B23S/30:31, 1/B23S/474:481, 1/B23S/509:510 | No text annotation | homologous J3_7A0S_001 J3_60031.2 | |
| J3_6N1D_069 | 1/B23S/30:31, 1/B23S/474:484, 1/B23S/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_6N1D_070 | 1/B23S/32:35, 1/B23S/445:461, 1/B23S/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6N1D_041 | 1/B23S/56:57, 1/B23S/70:76, 1/B23S/110:114 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_6N1D_042 | 1/B23S/269:270C, 1/B23S/270W:271D, 1/B23S/357O:370 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_6N1D_071 | 1/B23S/271:271, 1/B23S/357:375, 1/B23S/399:404 | No text annotation | ||
| J3_6N1D_043 | 1/B23S/683:689, 1/B23S/773:775, 1/B23S/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_6N1D_044 | 1/B23S/698:700, 1/B23S/732:736, 1/B23S/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6N1D_045 | 1/B23S/1055:1057, 1/B23S/1081:1087, 1/B23S/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_6N1D_046 | 1/B23S/1298:1303, 1/B23S/1625:1627, 1/B23S/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6N1D_047 | 1/B23S/1306:1309, 1/B23S/1605:1611, 1/B23S/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6N1D_048 | 1/B23S/1344:1350, 1/B23S/1381:1385, 1/B23S/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6N1D_073 | 1/B23S/1424:1429, 1/B23S/1564:1565, 1/B23S/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6N1D_049 | 1/B23S/2091:2093, 1/B23S/2196:2200, 1/B23S/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6N1D_050 | 1/B23S/2282:2284, 1/B23S/2384:2395, 1/B23S/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6N1D_051 | 1/B23S/2295:2297, 1/B23S/2321:2323, 1/B23S/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6N1D_052 | 1/B23S/2517:2520, 1/B23S/2545:2547, 1/B23S/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6N1D_053 | 1/B23S/2814:2815, 1/B23S/2831:2836, 1/B23S/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_6N1D_054 | 1/B5S/11:16, 1/B5S/68:69, 1/B5S/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J4_6N1D_001 | 1/A16S/115:122, 1/A16S/239:240, 1/A16S/286:289, 1/A16S/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6N1D_002 | 1/A16S/142:144, 1/A16S/178:183, 1/A16S/194:198, 1/A16S/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6N1D_003 | 1/A16S/575:577, 1/A16S/764:769, 1/A16S/810:821, 1/A16S/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_6N1D_004 | 1/A23S/268:269, 1/A23S/370:375, 1/A23S/399:406, 1/A23S/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_6N1D_005 | 1/A23S/297:301, 1/A23S/316:319, 1/A23S/323:325, 1/A23S/337:341 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
| J4_6N1D_006 | 1/A23S/601:604, 1/A23S/624:628, 1/A23S/635:638, 1/A23S/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6N1D_007 | 1/A23S/1270:1276, 1/A23S/1294:1295, 1/A23S/1645:1648, 1/A23S/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6N1D_008 | 1/A23S/1310:1314, 1/A23S/1338:1343, 1/A23S/1404:1405, 1/A23S/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6N1D_009 | 1/A23S/1313:1314, 1/A23S/1338:1343, 1/A23S/1404:1405, 1/A23S/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6N1D_010 | 1/A23S/1444:1445, 1/A23S/1466:1467, 1/A23S/1525:1526, 1/A23S/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_6N1D_011 | 1/A23S/1772:1776, 1/A23S/1788:1792, 1/A23S/1827:1830, 1/A23S/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6N1D_012 | 1/A23S/1833:1835, 1/A23S/1905:1906, 1/A23S/1924:1933, 1/A23S/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6N1D_013 | 1/A23S/2285:2289, 1/A23S/2343:2347, 1/A23S/2370:2372, 1/A23S/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6N1D_014 | 1/A23S/2643:2646, 1/A23S/2674:2676, 1/A23S/2731:2735, 1/A23S/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6N1D_015 | 1/APTN/7:10, 1/APTN/25:28, 1/APTN/42:49, 1/APTN/65:66 | No text annotation | homologous J4_4RDX_001 NA | |
| J4_6N1D_016 | 1/B16S/115:122, 1/B16S/239:240, 1/B16S/286:289, 1/B16S/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6N1D_017 | 1/B16S/142:144, 1/B16S/178:183, 1/B16S/194:198, 1/B16S/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6N1D_018 | 1/B16S/575:577, 1/B16S/764:769, 1/B16S/810:821, 1/B16S/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6N1D_019 | 1/B23S/268:270, 1/B23S/270:271, 1/B23S/404:406, 1/B23S/421:424 | No text annotation | ||
| J4_6N1D_020 | 1/B23S/297:301, 1/B23S/316:319, 1/B23S/323:325, 1/B23S/337:341 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
| J4_6N1D_021 | 1/B23S/601:604, 1/B23S/624:628, 1/B23S/635:638, 1/B23S/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6N1D_022 | 1/B23S/1270:1276, 1/B23S/1294:1295, 1/B23S/1645:1648, 1/B23S/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6N1D_023 | 1/B23S/1310:1314, 1/B23S/1338:1343, 1/B23S/1404:1405, 1/B23S/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6N1D_024 | 1/B23S/1313:1314, 1/B23S/1338:1343, 1/B23S/1404:1405, 1/B23S/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6N1D_025 | 1/B23S/1444:1445, 1/B23S/1466:1467, 1/B23S/1525:1526, 1/B23S/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_6N1D_026 | 1/B23S/1772:1776, 1/B23S/1788:1792, 1/B23S/1827:1830, 1/B23S/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6N1D_027 | 1/B23S/1833:1835, 1/B23S/1905:1906, 1/B23S/1924:1933, 1/B23S/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6N1D_028 | 1/B23S/2285:2289, 1/B23S/2343:2347, 1/B23S/2370:2372, 1/B23S/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6N1D_029 | 1/B23S/2643:2646, 1/B23S/2674:2676, 1/B23S/2731:2735, 1/B23S/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6N1D_030 | 1/BPTN/7:10, 1/BPTN/25:27, 1/BPTN/43:49, 1/BPTN/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.28 | |
| J5_6N1D_001 | 1/A16S/36:39, 1/A16S/403:406, 1/A16S/436:442, 1/A16S/492:500, 1/A16S/545:548 | No text annotation | homologous J5_6CZR_020 NA | |
| J5_6N1D_002 | 1/A16S/58:61, 1/A16S/106:113, 1/A16S/314:316, 1/A16S/337:339, 1/A16S/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6N1D_003 | 1/A23S/47:54, 1/A23S/116:121, 1/A23S/130:131, 1/A23S/148:150, 1/A23S/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6N1D_004 | 1/A23S/268:270, 1/A23S/270:271, 1/A23S/357:375, 1/A23S/399:406, 1/A23S/421:424 | No text annotation | ||
| J5_6N1D_005 | 1/A23S/531:533, 1/A23S/560:564, 1/A23S/577:579, 1/A23S/1261:1262, 1/A23S/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6N1D_006 | 1/A23S/584:589, 1/A23S/668:671, 1/A23S/809:812, 1/A23S/1195:1196, 1/A23S/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6N1D_007 | 1/A23S/1674:1682, 1/A23S/1706:1707, 1/A23S/1751:1752, 1/A23S/1756:1764, 1/A23S/1988:1990 | No text annotation | homologous J5_7A0S_005 J5_62523.6 | |
| J5_6N1D_008 | 1/A23S/2054:2064, 1/A23S/2446:2453, 1/A23S/2500:2508, 1/A23S/2580:2588, 1/A23S/2606:2615 | No text annotation | ||
| J5_6N1D_009 | 1/A23S/2074:2077, 1/A23S/2243:2246, 1/A23S/2258:2259, 1/A23S/2281:2282, 1/A23S/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_6N1D_010 | 1/B16S/36:39, 1/B16S/403:406, 1/B16S/436:442, 1/B16S/492:500, 1/B16S/545:548 | No text annotation | homologous J5_6CZR_020 NA | |
| J5_6N1D_011 | 1/B16S/58:61, 1/B16S/106:113, 1/B16S/314:316, 1/B16S/337:339, 1/B16S/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6N1D_012 | 1/B23S/47:54, 1/B23S/116:121, 1/B23S/130:131, 1/B23S/148:150, 1/B23S/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6N1D_013 | 1/B23S/531:533, 1/B23S/560:564, 1/B23S/577:579, 1/B23S/1261:1262, 1/B23S/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6N1D_014 | 1/B23S/584:589, 1/B23S/668:671, 1/B23S/809:812, 1/B23S/1195:1196, 1/B23S/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6N1D_015 | 1/B23S/1674:1682, 1/B23S/1706:1707, 1/B23S/1751:1752, 1/B23S/1756:1764, 1/B23S/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_6N1D_016 | 1/B23S/2057:2064, 1/B23S/2446:2453, 1/B23S/2500:2507, 1/B23S/2582:2588, 1/B23S/2606:2611 | No text annotation | ||
| J5_6N1D_017 | 1/B23S/2074:2077, 1/B23S/2243:2246, 1/B23S/2258:2259, 1/B23S/2281:2282, 1/B23S/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_6N1D_018 | 1/BATN/7:10, 1/BATN/25:27, 1/BATN/43:45, 1/BATN/47:49, 1/BATN/65:66 | No text annotation | homologous J5_4WZD_022 J5_70787.1 | |
| J6_6N1D_001 | 1/A23S/45:46, 1/A23S/179:183, 1/A23S/214:224, 1/A23S/231:235, 1/A23S/262:266, 1/A23S/426:433 | No text annotation | ||
| J6_6N1D_002 | 1/A23S/2074:2077, 1/A23S/2243:2246, 1/A23S/2258:2259, 1/A23S/2281:2284, 1/A23S/2384:2395, 1/A23S/2421:2435 | No text annotation | ||
| J6_6N1D_003 | 1/B23S/45:46, 1/B23S/179:183, 1/B23S/214:224, 1/B23S/231:235, 1/B23S/262:266, 1/B23S/426:433 | No text annotation | ||
| J6_6N1D_004 | 1/B23S/2074:2077, 1/B23S/2243:2246, 1/B23S/2258:2259, 1/B23S/2281:2284, 1/B23S/2384:2395, 1/B23S/2421:2435 | No text annotation | ||
| J7_6N1D_001 | 1/A23S/817:822, 1/A23S/835:836, 1/A23S/943:946, 1/A23S/971:976, 1/A23S/987:991, 1/A23S/1163:1164, 1/A23S/1185:1190 | No text annotation | ||
| J7_6N1D_002 | 1/B23S/817:822, 1/B23S/835:838, 1/B23S/940:946, 1/B23S/971:976, 1/B23S/987:991, 1/B23S/1163:1164, 1/B23S/1185:1190 | No text annotation | ||
| J8_6N1D_003 | 1/A23S/8:15, 1/A23S/525:531, 1/A23S/2018:2023, 1/A23S/2040:2043, 1/A23S/2625:2630, 1/A23S/2788:2792, 1/A23S/2804:2811, 1/A23S/2889:2895 | No text annotation | ||
| J8_6N1D_004 | 1/B23S/8:15, 1/B23S/525:531, 1/B23S/2018:2023, 1/B23S/2040:2043, 1/B23S/2625:2630, 1/B23S/2788:2792, 1/B23S/2804:2811, 1/B23S/2889:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6N1D_037 | No text annotation | ||
| J3_6N1D_072 | No text annotation | ||
| J8_6N1D_001 | No text annotation | ||
| J8_6N1D_002 | No text annotation |
Coloring options: