HL_6N1D_008

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1546

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6N1D|1|A16S|C|320
6N1D|1|A16S|A|321
6N1D|1|A16S|C|322
6N1D|1|A16S|U|323
6N1D|1|A16S|G|324
6N1D|1|A16S|A|325
6N1D|1|A16S|G|326
6N1D|1|A16S|A|327
6N1D|1|A16S|C|328
6N1D|1|A16S|A|329
6N1D|1|A16S|C|330
6N1D|1|A16S|G|331
6N1D|1|A16S|G|332
6N1D|1|A16S|G|333

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS16

30S ribosomal protein S16

Chain AS20

30S ribosomal protein S20