HL_6N1D_011

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6N1D|1|A16S|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.191

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6N1D|1|A16S|C|419
6N1D|1|A16S|U|420
6N1D|1|A16S|U|421
6N1D|1|A16S|C|422
6N1D|1|A16S|G|423
6N1D|1|A16S|G|424

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS03

30S ribosomal protein S3

Chain AS04

30S ribosomal protein S4

Chain BS11

30S ribosomal protein S11