HL_6N1D_049

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_049 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2795

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6N1D|1|A23S|C|543
6N1D|1|A23S|G|543|||A
6N1D|1|A23S|C|543|||B
6N1D|1|A23S|A|543|||C
6N1D|1|A23S|A|543|||D
6N1D|1|A23S|G|550

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL13

50S ribosomal protein L13

Chain AL21

50S ribosomal protein L21