HL_6N1D_060

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_060 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.2133

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6N1D|1|A23S|G|978
6N1D|1|A23S|G|979
6N1D|1|A23S|A|980
6N1D|1|A23S|A|981
6N1D|1|A23S|C|982
6N1D|1|A23S|A|983
6N1D|1|A23S|A|984
6N1D|1|A23S|C|985

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL13

50S ribosomal protein L13

Chain AL20

50S ribosomal protein L20

Chain AL21

50S ribosomal protein L21

Chain AL30

50S ribosomal protein L30