HL_6N1D_061

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6N1D|1|A23S|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_061 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3185

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6N1D|1|A23S|C|1064
6N1D|1|A23S|U|1065
6N1D|1|A23S|U|1066
6N1D|1|A23S|A|1067
6N1D|1|A23S|G|1068
6N1D|1|A23S|A|1069
6N1D|1|A23S|A|1070
6N1D|1|A23S|G|1071
6N1D|1|A23S|C|1072
6N1D|1|A23S|A|1073
6N1D|1|A23S|G|1074

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL16

50S ribosomal protein L16