HL_6N1D_066

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6N1D|1|A23S|G|1325, 6N1D|1|A23S|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_066 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1514

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6N1D|1|A23S|G|1324
6N1D|1|A23S|G|1325
6N1D|1|A23S|U|1326
6N1D|1|A23S|C|1327
6N1D|1|A23S|G|1328
6N1D|1|A23S|U|1329
6N1D|1|A23S|C|1330

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL17

50S ribosomal protein L17

Chain AL22

50S ribosomal protein L22