HL_6N1D_068

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6N1D|1|A23S|U|1396, 6N1D|1|A23S|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_068 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.2931

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6N1D|1|A23S|G|1389
6N1D|1|A23S|U|1390
6N1D|1|A23S|U|1391
6N1D|1|A23S|A|1392
6N1D|1|A23S|A|1393
6N1D|1|A23S|U|1394
6N1D|1|A23S|A|1395
6N1D|1|A23S|U|1396
6N1D|1|A23S|U|1397
6N1D|1|A23S|C|1398

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL23

50S ribosomal protein L23