3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
6N1D|1|A23S|A|1614, 6N1D|1|A23S|A|1616, 6N1D|1|A23S|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6N1D_073 not in the Motif Atlas
Homologous match to HL_4WF9_038
Geometric discrepancy: 0.1612
The information below is about HL_4WF9_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6N1D|1|A23S|C|1612
6N1D|1|A23S|G|1613
6N1D|1|A23S|A|1614
6N1D|1|A23S|C|1615
6N1D|1|A23S|A|1616
6N1D|1|A23S|C|1617
6N1D|1|A23S|A|1618
6N1D|1|A23S|G|1619

Current chains

Chain A23S
23S rRNA

Nearby chains

Chain AL22
50S ribosomal protein L22
Chain AL34
50S ribosomal protein L34

Coloring options:


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