HL_6N1D_086

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6N1D|1|A23S|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_086 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.2334

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N1D|1|A23S|C|2248
6N1D|1|A23S|U|2249
6N1D|1|A23S|G|2250
6N1D|1|A23S|G|2251
6N1D|1|A23S|G|2252
6N1D|1|A23S|G|2253
6N1D|1|A23S|C|2254
6N1D|1|A23S|G|2255
6N1D|1|A23S|G|2256

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL16

50S ribosomal protein L16

Chain AL27

50S ribosomal protein L27