HL_6N1D_089

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_089 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1164

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6N1D|1|A23S|C|2324
6N1D|1|A23S|G|2325
6N1D|1|A23S|C|2326
6N1D|1|A23S|A|2327
6N1D|1|A23S|A|2328
6N1D|1|A23S|G|2329
6N1D|1|A23S|G|2330
6N1D|1|A23S|G|2331

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL05

50S ribosomal protein L5

Chain AL27

50S ribosomal protein L27