HL_6N1D_091

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_091 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.1152

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6N1D|1|A23S|C|2374
6N1D|1|A23S|G|2375
6N1D|1|A23S|A|2376
6N1D|1|A23S|A|2377
6N1D|1|A23S|A|2378
6N1D|1|A23S|G|2379

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL18

50S ribosomal protein L18

Chain AL33

50S ribosomal protein L33