HL_6N1D_101

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6N1D|1|A23S|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_101 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1219

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6N1D|1|A23S|G|2819
6N1D|1|A23S|A|2820
6N1D|1|A23S|A|2821
6N1D|1|A23S|G|2822
6N1D|1|A23S|A|2823
6N1D|1|A23S|C|2824
6N1D|1|A23S|G|2825
6N1D|1|A23S|A|2826
6N1D|1|A23S|C|2827

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL17

50S ribosomal protein L17