HL_6N1D_105

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAGCUGGGAG

Length

10 nucleotides

Bulged bases

6N1D|1|APTN|C|16, 6N1D|1|APTN|U|17, 6N1D|1|APTN|G|18, 6N1D|1|APTN|G|19, 6N1D|1|APTN|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_105 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.1552

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N1D|1|APTN|C|13
6N1D|1|APTN|A|14
6N1D|1|APTN|G|15
6N1D|1|APTN|C|16
6N1D|1|APTN|U|17
6N1D|1|APTN|G|18
6N1D|1|APTN|G|19
6N1D|1|APTN|G|20
6N1D|1|APTN|A|21
6N1D|1|APTN|G|22

Current chains

Chain APTN

P-tRNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AL01

50S ribosomal protein L1