3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
G(5MU)(PSU)CGAUCC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6N1D_107 not in the Motif Atlas
Homologous match to HL_6CFJ_108
Geometric discrepancy: 0.2233
The information below is about HL_6CFJ_108
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_33597.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
96

Unit IDs

6N1D|1|APTN|G|53
6N1D|1|APTN|5MU|54
6N1D|1|APTN|PSU|55
6N1D|1|APTN|C|56
6N1D|1|APTN|G|57
6N1D|1|APTN|A|58
6N1D|1|APTN|U|59
6N1D|1|APTN|C|60
6N1D|1|APTN|C|61

Current chains

Chain APTN
P-tRNA

Nearby chains

Chain A23S
Large subunit ribosomal RNA; LSU rRNA
Chain AL01
50S ribosomal protein L1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7078 s
Application loaded.