HL_6N1D_107
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N1D_107 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.2233
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6N1D|1|APTN|G|53
6N1D|1|APTN|5MU|54
6N1D|1|APTN|PSU|55
6N1D|1|APTN|C|56
6N1D|1|APTN|G|57
6N1D|1|APTN|A|58
6N1D|1|APTN|U|59
6N1D|1|APTN|C|60
6N1D|1|APTN|C|61
Current chains
- Chain APTN
- P-tRNA
Nearby chains
- Chain A23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL01
- 50S ribosomal protein L1
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