HL_6N1D_114

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_114 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1453

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6N1D|1|B16S|U|296
6N1D|1|B16S|G|297
6N1D|1|B16S|A|298
6N1D|1|B16S|G|299
6N1D|1|B16S|A|300
6N1D|1|B16S|G|301

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS04

30S ribosomal protein S4

Chain BS05

30S ribosomal protein S5

Chain BS17

30S ribosomal protein S17